VCFtools
Description
VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
Licence
GNU GPL 3
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of vcftools and load default version of vcftools as
module avail vcftools/ # list available modules module load vcftools # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail vcftools
and choose explicit version you want to use.
Documentation
https://vcftools.github.io/examples.html