VCFtools

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Description

VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.

Availability

Versions available:

  • 0. 1. 15
  • 0. 1. 11

Use

module add vcftools-0.1.15
vcftools -help
vcftools [ --vcf FILE | --gzvcf FILE | --bcf FILE] [ --out OUTPUT PREFIX ] [ FILTERING OPTIONS ] [ OUTPUT OPTIONS ]

You can get additional help by executing

man vcftools

Documentation

https://vcftools.github.io/examples.html

Licence

GNU GPL 3

Program manager

meta@cesnet.cz

Homepage

https://vcftools.github.io/index.html