Unicycler

Z MetaCentrum
Skočit na navigaci Skočit na vyhledávání

Description

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a short-read-first hybrid assembly.

Availability

versions: 0.4.8, 0.5.0


Use

module add unicycler-0.5.0

unicycler --help

Documentation

https://github.com/rrwick/Unicycler


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/rrwick/Unicycler