Trinotate
Description
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms. Trinotate makes use of a number of different well referenced methods for functional annotation including homology search to known sequence data (NCBI-BLAST), protein domain identification (HMMER/PFAM), protein signal prediction (singalP/tmHMM), and comparison to currently curated annotation databases (EMBL Uniprot eggNOG/GO Pathways databases). All functional annotation data derived from the analysis of transcripts is integrated into a SQLite database which allows fast efficient searching for terms with specific qualities related to a desired scientific hypothesis or a means to create a whole annotation report for a transcriptome.
Availability
Version from 20140708
Licence
GPL see https://github.com/Trinotate/Trinotate/blob/master/LICENSE.txt
Use
module add trinotate-201407 Trinotate -help
It includes modules jdk-8, hmmer-3.1b1-gcc, trinity-201404, blast+-2.2.29 and perl-5.10.1
Documentation
https://trinotate.github.io/#SeqAnalyses
