Trim Galore!

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Description

A wrapper tool around Cutadapt to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.

License

GNU GPL v3 or later, https://www.gnu.org/copyleft/gpl.html

Usage

module avail trim_galore/ # list available modules
module load trim_galore   # load (default) module

(Program Cutadapt is made available automatically by the command above.)

List of all available options can be displayed using command

trim_galore --help
$ module add  trim_galore-0.6.2
$ trim_galore [options] <filename(s)>

(Program Cutadapt is made available automatically by the command above.)

List of all available options can be displayed using command

trim_galore --help

Documentation

Official website: http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

Official documentation (PDF): http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_User_Guide_v0.4.1.pdf

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

Useful links