Trim Galore!

Description

A wrapper tool around Cutadapt to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.

Availability

Version 0.4.1. (module trim_galore-0.4.1)

Version 0.6.2 (modules trim_galore-0.6.2 and trim_galore-0.6.2_py3)

Use

Using the application:

$ module add trim_galore-0.4.1
$ trim_galore [options] <filename(s)>

(Program Cutadapt is made available automatically by the command above.)

List of all available options can be displayed using command

trim_galore --help

$ module add  trim_galore-0.6.2
$ trim_galore [options] <filename(s)>

(Program Cutadapt is made available automatically by the command above.)

List of all available options can be displayed using command

trim_galore --help

Documentation

Official website:

http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

Official documentation (PDF):

http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_User_Guide_v0.4.1.pdf

License

GNU GPL v3 or later.

https://www.gnu.org/copyleft/gpl.html

Program administrator

meta@cesnet.cz

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

Useful links

• Cutadapt official homepage