Trim Galore!
Description
A wrapper tool around Cutadapt to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
License
GNU GPL v3 or later, https://www.gnu.org/copyleft/gpl.html
Usage
module avail trim_galore/ # list available modules module load trim_galore # load (default) module
(Program Cutadapt is made available automatically by the command above.)
List of all available options can be displayed using command
trim_galore --help
$ module add trim_galore-0.6.2
$ trim_galore [options] <filename(s)>
(Program Cutadapt is made available automatically by the command above.)
List of all available options can be displayed using command
trim_galore --help
Documentation
Official website: http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Official documentation (PDF): http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_User_Guide_v0.4.1.pdf
Homepage
http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/