TreeMix

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Description

TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations. In the underlying model, the modern-day populations in a species are related to a common ancestor via a graph of ancestral populations. We use the allele frequencies in the modern populations to infer the structure of this graph. TreeMix uses large numbers of SNPs to estimate the historical relationships among populations, using a graph representation that allows both population splits and migration events.

Availability

Program is available in version 1.12

Licence

GNU GPL 3

Use

module add treemix-1.12
treemix -h

Documentation

https://bitbucket.org/nygcresearch/treemix/wiki/Home

Program manager

meta@cesnet.cz

Homepage

https://bitbucket.org/nygcresearch/treemix/wiki/Home