TransLiG

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Description

TransLig is an efficient genome-guided trascriptome assembler for RNA-seq data. It can assemble all transcripts from short paired-end reads using a reference genome and analyze their abundances. The software expects as input alignment file by Tophat2 BAM format, and ouput all assembled candidate transcripts in gtf format.

Availability

translig-1.3

Use

module add translig-1.3
Assemble [--reads/--kmers] <filename>  [opts]

Documentation

Assemble --help

Licence

This software is free, open-source software released under the GNU General Public License.

Program manager

meta@cesnet.cz

Homepage

https://sourceforge.net/projects/transcriptomeassembly/files/