TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Version 2.0.4, 2.0.8 and 2.0.12. Available modules:
tophat-2.0.4 tophat-2.0.8 tophat-2.0.12 tophat-2.1.1
module add tophat-2.1.1 tophat -h cuffdiff
and other binaries, see Documentation.
Boost Software License, Version 1.0