Tedna
Description
Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.
License
unknown, probably free
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of tedna and load default version of tedna as
module avail tedna/ # list available modules module load tedna # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail tedna
and choose explicit version you want to use.
Documentation
https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf or it's local copy in /software/tedna/version_number/share/doc/tedna_doc.pdf.