Tassel

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Description

TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics

License

GNU GPL 2.1 GNU GPL

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of tassel and load default version of tassel as

module avail tassel/ # list available modules
module load tassel   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail tassel

and choose explicit version you want to use. Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

Documentation is available in pdf.

Homepage

URL: http://www.maizegenetics.net/#!tassel/c17q9