TRF

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Description

Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences

Licence

Public

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of trf and load default version of trf as

module avail trf/ # list available modules
module load trf   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail trf

and choose explicit version you want to use.

Documentation

https://github.com/Benson-Genomics-Lab/TRF#purpose

Homepage

https://github.com/Benson-Genomics-Lab/TRF#purpose