Stacks

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Description

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Availability

Version 1.19, 1.34, 1.35, 1.39 and 1.45

Licence

GNU GPL 3

Use

module add stacks-1.39
process_radtags -h

Documentation

http://catchenlab.life.illinois.edu/stacks/manual/

Program manager

meta@cesnet.cz

Homepage

http://catchenlab.life.illinois.edu/stacks/