YASRA

Z MetaCentrum
Přejít na: navigace, hledání


Description

YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads.

Category

Assembler

Availability

Version 2.33

Licence

GNU GPL

Use

module add yasra-2.33
lastz --help=yasra
assembler  
fasta.py
genomewelder
trim_assembly
best_hit
genomewalker
make_template

Documentation

https://github.com/aakrosh/YASRA

Homepage

http://www.bx.psu.edu/miller_lab/

Program manager

meta@cesnet.cz