Xmipp

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Description

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

Availability

Program is actually available in version 3.0.1.

Module versions:

xmipp-3.0.1

Licence

GNU/GPL v2 licence + citation request: If you have used Xmipp in your work, please cite our papers as given in the List Of References.

Use

Initialize environment by command

module add xmipp-3.0.1

This makes available the path to program binaries as well as aliases for the most used ones:

alias xa='xmipp_apropos'
alias xb='xmipp_browser'
alias xic='xmipp_image_convert'
alias xih='xmipp_image_header'
alias xio='xmipp_image_operate'
alias xis='xmipp_image_statistics'
alias xmipp='xmipp_protocols'
alias xmipp_show='xmipp_showj'
alias xmp='xmipp_metadata_plot'
alias xmu='xmipp_metadata_utilities'
alias xp='xmipp_protocols'
alias xrf='xmipp_resolution_fsc'
alias xrs='xmipp_resolution_ssnr'
alias xs='xmipp_showj'
alias xsj='xmipp_showj'
alias xtf='xmipp_transform_filter'
alias xtg='xmipp_transform_geometry'
alias xtn='xmipp_transform_normalize'

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

User documentation is available in http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/Documentation.

Program administrator

meta@cesnet.cz

Homepage

http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/WebHome