PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources.
Version 1.0.10. Freely available to users. Modules:
CC BY-SA 4.0 – volně k použití
Initialize environment with command:
module add pasha-1.0.10
Basic documentation is at http://pasha.sourceforge.net/homepage.htm#installation.