PASHA

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Description

PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources.

Availability

Version 1.0.10. Freely available to users. Modules:

pasha-1.0.10

Licence

CC BY-SA 4.0 – volně k použití

Use

Initialize environment with command:

module add pasha-1.0.10

Documentation

Basic documentation is at http://pasha.sourceforge.net/homepage.htm#installation.

Program manager

meta@cesnet.cz

Homepage

http://pasha.sourceforge.net/homepage.htm