Minia

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Description

Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Availability

Version 1.5418 (compiled with k=100)

Licence

Affero GPL version 3 license

Use

module add minia-1.5418
./minia

Documentation

http://minia.genouest.org/files/minia.pdf

Program manager

meta@cesnet.cz

Homepage

http://minia.genouest.org/