Dendroscope

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Description

Dendroscope is a user-friendly program for visualizing and navigating phylogenetic trees, for both small and large datasets. The software is written in Java 1.4. The program provides all standard tree visualizations and is optimized to run interactively on trees containing hundreds of thousands of taxa. The program provides tree editing and graphics export capabilities[1].

[1]Huson, D.H., Richter, D.C., Rausch, C., Dezulian, T., Franz, M., Rupp, R. (2007). Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics. 8, 460.

Availability

Module dendroscope-3.2.8: Dendroscope version 3.2.8

Every user is required to ask for a licence key via the producer's webpage.

Use

ssh -X skirit.metacentrum.cz
qsub -X -I -q short -l nodes=1:ppn=1 -l mem=2gb
module add dendroscope-3.2.8 ; Dendroscope

Documentation

http://ab.inf.uni-tuebingen.de/software/dendroscope/

Licence

free for academic use (requires a licence key -- see above)

Supported platforms

amd64

Program administrator

Petr Navrátil (ÚEB AV ČR), Tom Rebok meta@cesnet.cz

Homepage

http://www.uni-tuebingen.de/