Cegma

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Description

CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data. We define a set of 458 core proteins that are present in a wide range of taxa. Since these proteins are highly conserved, sequence alignment methods can reliably identify their exon-intron structures in genomic sequences. The resulting dataset can be used to train a gene finder or to assess the completness of the genome or annotations.

Availability

Version 2.5

Use

module add cegma-2.5

This makes available the path to the program binaries.

Documentation

http://korflab.ucdavis.edu/datasets/cegma/sample_CEGMA_output.txt

Licence

GNU GPL

Program manager

meta@cesnet.cz

Homepage

http://korflab.ucdavis.edu/datasets/cegma/