CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as structure, so that they match up as closely as possible. The user has the option of choosing one of three algorithms for aligning replicates, with a tradeoff of speed and similarity to the optimal alignment.
Version 1.1.2. Freely available to all users.
You can load the module via the command
module add clumpp
This makes available the path to the program binary. To use the program type:
$ CLUMPP <paramfile>
Documentation is available in file /software/clumpp-1.1.2/CLUMPP_Manual.pdf or at the project website.