CLUMPP

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Description

CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as structure, so that they match up as closely as possible. The user has the option of choosing one of three algorithms for aligning replicates, with a tradeoff of speed and similarity to the optimal alignment.

Availability

Version 1.1.2. Freely available to all users.

Licence

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Use

You can load the module via the command

module add clumpp

This makes available the path to the program binary. To use the program type:

$ CLUMPP <paramfile>

Documentation

Documentation is available in file /software/clumpp-1.1.2/CLUMPP_Manual.pdf or at the project website.

Program manager

meta@cesnet.cz

Homepage

http://www.stanford.edu/group/rosenberglab/clumpp.html