ALLPATHS is a whole genome shotgun assembler, that can generate high quality assemblies from very short reads. Assemblies are presented in a graph form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies.
Version 2.2 and LG-48203. Available modules:
module add allpaths-2.2 RunAllPaths
or other binaries (see Documentation).
- ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/AllPaths-LG_Manual.pdf (also available in directory /software/allpathslg-48203/doc)