Allpaths

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Description

ALLPATHS is a whole genome shotgun assembler, that can generate high quality assemblies from very short reads. Assemblies are presented in a graph form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies.

Availability

Version 2.2 and LG-48203. Available modules:

allpaths-2.2
allpathslg-48203

Use

module add allpaths-2.2
RunAllPaths

or other binaries (see Documentation).

Documentation

Licence

Program manager

meta@cesnet.cz

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